How To Install xtpcpp-doc on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
3 minutes • 439 words
Introduction
In this tutorial we learn how to install xtpcpp-doc on Ubuntu.
What is xtpcpp-doc
xtpcpp-doc is:
The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export
This package ships the user manual in both PDF and HTML formats.
There are three methods to install xtpcpp-doc on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install xtpcpp-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install xtpcpp-doc using apt-get by running the following command:
sudo apt-get -y install xtpcpp-doc
Install xtpcpp-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install xtpcpp-doc using apt by running the following command:
sudo apt -y install xtpcpp-doc
Install xtpcpp-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install xtpcpp-doc using aptitude by running the following command:
sudo aptitude -y install xtpcpp-doc
How To Uninstall xtpcpp-doc on Ubuntu
To uninstall only the xtpcpp-doc package we can use the following command:
sudo apt-get remove xtpcpp-doc
Uninstall xtpcpp-doc And Its Dependencies
To uninstall xtpcpp-doc and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove xtpcpp-doc
Remove xtpcpp-doc Configurations and Data
To remove xtpcpp-doc configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge xtpcpp-doc
Remove xtpcpp-doc configuration, data, and all of its dependencies
We can use the following command to remove xtpcpp-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge xtpcpp-doc
Dependencies
xtpcpp-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install xtpcpp-doc package on Ubuntu using different package management tools: apt, apt-get and aptitude.