How To Install wham-align on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 347 words
Introduction
In this tutorial we learn how to install wham-align on Ubuntu.
What is wham-align
wham-align is:
This package provides functionality analogous to BWA or bowtie in aligning reads from next-generation DNA sequencing machines against a reference genome.
There are three methods to install wham-align on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install wham-align Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install wham-align using apt-get by running the following command:
sudo apt-get -y install wham-align
Install wham-align Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install wham-align using apt by running the following command:
sudo apt -y install wham-align
Install wham-align Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install wham-align using aptitude by running the following command:
sudo aptitude -y install wham-align
How To Uninstall wham-align on Ubuntu
To uninstall only the wham-align package we can use the following command:
sudo apt-get remove wham-align
Uninstall wham-align And Its Dependencies
To uninstall wham-align and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove wham-align
Remove wham-align Configurations and Data
To remove wham-align configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge wham-align
Remove wham-align configuration, data, and all of its dependencies
We can use the following command to remove wham-align configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge wham-align
Dependencies
wham-align have the following dependencies:
References
Summary
In this tutorial we learn how to install wham-align package on Ubuntu using different package management tools: apt, apt-get and aptitude.