How To Install virulencefinder on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 370 words
Introduction
In this tutorial we learn how to install virulencefinder on Ubuntu.
What is virulencefinder
virulencefinder is:
The VirulenceFinder service contains one Python script virulencefinder.py which is the script of the latest version of the VirulenceFinder service. VirulenceFinder identifies viruelnce genes in total or partial sequenced isolates of bacteria - at the moment only E. coli, Enterococcus, S. aureus and Listeria are available.
There are three methods to install virulencefinder on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install virulencefinder Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install virulencefinder using apt-get by running the following command:
sudo apt-get -y install virulencefinder
Install virulencefinder Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install virulencefinder using apt by running the following command:
sudo apt -y install virulencefinder
Install virulencefinder Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install virulencefinder using aptitude by running the following command:
sudo aptitude -y install virulencefinder
How To Uninstall virulencefinder on Ubuntu
To uninstall only the virulencefinder package we can use the following command:
sudo apt-get remove virulencefinder
Uninstall virulencefinder And Its Dependencies
To uninstall virulencefinder and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove virulencefinder
Remove virulencefinder Configurations and Data
To remove virulencefinder configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge virulencefinder
Remove virulencefinder configuration, data, and all of its dependencies
We can use the following command to remove virulencefinder configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge virulencefinder
Dependencies
virulencefinder have the following dependencies:
References
Summary
In this tutorial we learn how to install virulencefinder package on Ubuntu using different package management tools: apt, apt-get and aptitude.