How To Install uncalled on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 358 words
Introduction
In this tutorial we learn how to install uncalled on Ubuntu.
What is uncalled
uncalled is:
Streaming algorithm for mapping raw nanopore signal to DNA references
Enables real-time enrichment or depletion on Oxford Nanopore Technologies (ONT) MinION runs via ReadUntil.
Also supports standalone signal mapping of fast5 reads
There are three methods to install uncalled on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install uncalled Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install uncalled using apt-get by running the following command:
sudo apt-get -y install uncalled
Install uncalled Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install uncalled using apt by running the following command:
sudo apt -y install uncalled
Install uncalled Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install uncalled using aptitude by running the following command:
sudo aptitude -y install uncalled
How To Uninstall uncalled on Ubuntu
To uninstall only the uncalled package we can use the following command:
sudo apt-get remove uncalled
Uninstall uncalled And Its Dependencies
To uninstall uncalled and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove uncalled
Remove uncalled Configurations and Data
To remove uncalled configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge uncalled
Remove uncalled configuration, data, and all of its dependencies
We can use the following command to remove uncalled configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge uncalled
Dependencies
uncalled have the following dependencies:
References
Summary
In this tutorial we learn how to install uncalled package on Ubuntu using different package management tools: apt, apt-get and aptitude.