How To Install tvc on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 374 words
Introduction
In this tutorial we learn how to install tvc on Ubuntu.
What is tvc
tvc is:
Torrent Variant Caller (TVC) is a genetic variant caller for Ion Torrent sequencing platforms, and is specially optimized to exploit the underlying flow signal information in the statistical model to evaluate variants. Torrent Variant Caller is designed to call single-nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs), insertions, deletions, and block substitutions.
There are three methods to install tvc on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install tvc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install tvc using apt-get by running the following command:
sudo apt-get -y install tvc
Install tvc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install tvc using apt by running the following command:
sudo apt -y install tvc
Install tvc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install tvc using aptitude by running the following command:
sudo aptitude -y install tvc
How To Uninstall tvc on Ubuntu
To uninstall only the tvc package we can use the following command:
sudo apt-get remove tvc
Uninstall tvc And Its Dependencies
To uninstall tvc and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove tvc
Remove tvc Configurations and Data
To remove tvc configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge tvc
Remove tvc configuration, data, and all of its dependencies
We can use the following command to remove tvc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge tvc
Dependencies
tvc have the following dependencies:
References
Summary
In this tutorial we learn how to install tvc package on Ubuntu using different package management tools: apt, apt-get and aptitude.