How To Install tiddit on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 401 words
Introduction
In this tutorial we learn how to install tiddit on Ubuntu.
What is tiddit
tiddit is:
TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.
TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.
There are three methods to install tiddit on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install tiddit Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install tiddit using apt-get by running the following command:
sudo apt-get -y install tiddit
Install tiddit Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install tiddit using apt by running the following command:
sudo apt -y install tiddit
Install tiddit Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install tiddit using aptitude by running the following command:
sudo aptitude -y install tiddit
How To Uninstall tiddit on Ubuntu
To uninstall only the tiddit package we can use the following command:
sudo apt-get remove tiddit
Uninstall tiddit And Its Dependencies
To uninstall tiddit and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove tiddit
Remove tiddit Configurations and Data
To remove tiddit configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge tiddit
Remove tiddit configuration, data, and all of its dependencies
We can use the following command to remove tiddit configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge tiddit
Dependencies
tiddit have the following dependencies:
References
Summary
In this tutorial we learn how to install tiddit package on Ubuntu using different package management tools: apt, apt-get and aptitude.