How To Install theseus-examples on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 410 words
Introduction
In this tutorial we learn how to install theseus-examples on Ubuntu.
What is theseus-examples
theseus-examples is:
Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.
When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.
This package contains usage examples for theseus.
There are three methods to install theseus-examples on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install theseus-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install theseus-examples using apt-get by running the following command:
sudo apt-get -y install theseus-examples
Install theseus-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install theseus-examples using apt by running the following command:
sudo apt -y install theseus-examples
Install theseus-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install theseus-examples using aptitude by running the following command:
sudo aptitude -y install theseus-examples
How To Uninstall theseus-examples on Ubuntu
To uninstall only the theseus-examples package we can use the following command:
sudo apt-get remove theseus-examples
Uninstall theseus-examples And Its Dependencies
To uninstall theseus-examples and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove theseus-examples
Remove theseus-examples Configurations and Data
To remove theseus-examples configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge theseus-examples
Remove theseus-examples configuration, data, and all of its dependencies
We can use the following command to remove theseus-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge theseus-examples
Dependencies
theseus-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install theseus-examples package on Ubuntu using different package management tools: apt, apt-get and aptitude.