How To Install snakemake-doc on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 380 words
Introduction
In this tutorial we learn how to install snakemake-doc on Ubuntu.
What is snakemake-doc
snakemake-doc is:
Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.
This package provides the Sphinx-generated documentation and examples.
There are three methods to install snakemake-doc on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install snakemake-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install snakemake-doc using apt-get by running the following command:
sudo apt-get -y install snakemake-doc
Install snakemake-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install snakemake-doc using apt by running the following command:
sudo apt -y install snakemake-doc
Install snakemake-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install snakemake-doc using aptitude by running the following command:
sudo aptitude -y install snakemake-doc
How To Uninstall snakemake-doc on Ubuntu
To uninstall only the snakemake-doc package we can use the following command:
sudo apt-get remove snakemake-doc
Uninstall snakemake-doc And Its Dependencies
To uninstall snakemake-doc and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove snakemake-doc
Remove snakemake-doc Configurations and Data
To remove snakemake-doc configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge snakemake-doc
Remove snakemake-doc configuration, data, and all of its dependencies
We can use the following command to remove snakemake-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge snakemake-doc
Dependencies
snakemake-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install snakemake-doc package on Ubuntu using different package management tools: apt, apt-get and aptitude.