How To Install seqcluster on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 364 words
Introduction
In this tutorial we learn how to install seqcluster on Ubuntu.
What is seqcluster
seqcluster is:
Seqcluster investigates small RNA sequences of all sorts in RNA sequencing data. This is especially helpful for the identification of RNA that is neither coding nor belonging to the already well-established group of miRNA, towards many tools feel constrained to.
There are three methods to install seqcluster on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install seqcluster Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install seqcluster using apt-get by running the following command:
sudo apt-get -y install seqcluster
Install seqcluster Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install seqcluster using apt by running the following command:
sudo apt -y install seqcluster
Install seqcluster Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install seqcluster using aptitude by running the following command:
sudo aptitude -y install seqcluster
How To Uninstall seqcluster on Ubuntu
To uninstall only the seqcluster package we can use the following command:
sudo apt-get remove seqcluster
Uninstall seqcluster And Its Dependencies
To uninstall seqcluster and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove seqcluster
Remove seqcluster Configurations and Data
To remove seqcluster configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge seqcluster
Remove seqcluster configuration, data, and all of its dependencies
We can use the following command to remove seqcluster configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge seqcluster
Dependencies
seqcluster have the following dependencies:
References
Summary
In this tutorial we learn how to install seqcluster package on Ubuntu using different package management tools: apt, apt-get and aptitude.