How To Install r-bioc-tximportdata on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 372 words
Introduction
In this tutorial we learn how to install r-bioc-tximportdata on Ubuntu.
What is r-bioc-tximportdata
r-bioc-tximportdata is:
This package provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. For details on version numbers, sample information, and details on calls, see the package vignette.
There are three methods to install r-bioc-tximportdata on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-tximportdata Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-tximportdata using apt-get by running the following command:
sudo apt-get -y install r-bioc-tximportdata
Install r-bioc-tximportdata Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-tximportdata using apt by running the following command:
sudo apt -y install r-bioc-tximportdata
Install r-bioc-tximportdata Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-tximportdata using aptitude by running the following command:
sudo aptitude -y install r-bioc-tximportdata
How To Uninstall r-bioc-tximportdata on Ubuntu
To uninstall only the r-bioc-tximportdata package we can use the following command:
sudo apt-get remove r-bioc-tximportdata
Uninstall r-bioc-tximportdata And Its Dependencies
To uninstall r-bioc-tximportdata and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove r-bioc-tximportdata
Remove r-bioc-tximportdata Configurations and Data
To remove r-bioc-tximportdata configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge r-bioc-tximportdata
Remove r-bioc-tximportdata configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-tximportdata configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-tximportdata
Dependencies
r-bioc-tximportdata have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-tximportdata package on Ubuntu using different package management tools: apt, apt-get and aptitude.