How To Install r-bioc-rgsepd on Ubuntu

Posted on April 1, 2023 (Last modified on May 20, 2023 )

2 minutes • 384 words

Introduction

In this tutorial we learn how to install r-bioc-rgsepd on Ubuntu.

What is `r-bioc-rgsepd`

r-bioc-rgsepd is:

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

There are three methods to install r-bioc-rgsepd on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-rgsepd Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-rgsepd using apt-get by running the following command:

sudo apt-get -y install r-bioc-rgsepd

Install r-bioc-rgsepd Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-rgsepd using apt by running the following command:

sudo apt -y install r-bioc-rgsepd

Install r-bioc-rgsepd Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-rgsepd using aptitude by running the following command:

sudo aptitude -y install r-bioc-rgsepd

How To Uninstall r-bioc-rgsepd on Ubuntu

To uninstall only the r-bioc-rgsepd package we can use the following command:

sudo apt-get remove r-bioc-rgsepd

Uninstall r-bioc-rgsepd And Its Dependencies

To uninstall r-bioc-rgsepd and its dependencies that are no longer needed by Ubuntu, we can use the command below:

sudo apt-get -y autoremove r-bioc-rgsepd

Remove r-bioc-rgsepd Configurations and Data

To remove r-bioc-rgsepd configuration and data from Ubuntu we can use the following command:

sudo apt-get -y purge r-bioc-rgsepd

Remove r-bioc-rgsepd configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-rgsepd configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-rgsepd

Dependencies

r-bioc-rgsepd have the following dependencies:

References

r-bioc-rgsepd website

Summary

In this tutorial we learn how to install r-bioc-rgsepd package on Ubuntu using different package management tools: apt, apt-get and aptitude.