How To Install r-bioc-noiseq on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 366 words
Introduction
In this tutorial we learn how to install r-bioc-noiseq on Ubuntu.
What is r-bioc-noiseq
r-bioc-noiseq is:
Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.
There are three methods to install r-bioc-noiseq on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-noiseq Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-noiseq using apt-get by running the following command:
sudo apt-get -y install r-bioc-noiseq
Install r-bioc-noiseq Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-noiseq using apt by running the following command:
sudo apt -y install r-bioc-noiseq
Install r-bioc-noiseq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-noiseq using aptitude by running the following command:
sudo aptitude -y install r-bioc-noiseq
How To Uninstall r-bioc-noiseq on Ubuntu
To uninstall only the r-bioc-noiseq package we can use the following command:
sudo apt-get remove r-bioc-noiseq
Uninstall r-bioc-noiseq And Its Dependencies
To uninstall r-bioc-noiseq and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove r-bioc-noiseq
Remove r-bioc-noiseq Configurations and Data
To remove r-bioc-noiseq configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge r-bioc-noiseq
Remove r-bioc-noiseq configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-noiseq configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-noiseq
Dependencies
r-bioc-noiseq have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-noiseq package on Ubuntu using different package management tools: apt, apt-get and aptitude.