How To Install r-bioc-biovizbase on Ubuntu

Posted on April 1, 2023 (Last modified on May 20, 2023 )

2 minutes • 384 words

Introduction

In this tutorial we learn how to install r-bioc-biovizbase on Ubuntu.

What is `r-bioc-biovizbase`

r-bioc-biovizbase is:

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

There are three methods to install r-bioc-biovizbase on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-biovizbase Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-biovizbase using apt-get by running the following command:

sudo apt-get -y install r-bioc-biovizbase

Install r-bioc-biovizbase Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-biovizbase using apt by running the following command:

sudo apt -y install r-bioc-biovizbase

Install r-bioc-biovizbase Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-biovizbase using aptitude by running the following command:

sudo aptitude -y install r-bioc-biovizbase

How To Uninstall r-bioc-biovizbase on Ubuntu

To uninstall only the r-bioc-biovizbase package we can use the following command:

sudo apt-get remove r-bioc-biovizbase

Uninstall r-bioc-biovizbase And Its Dependencies

To uninstall r-bioc-biovizbase and its dependencies that are no longer needed by Ubuntu, we can use the command below:

sudo apt-get -y autoremove r-bioc-biovizbase

Remove r-bioc-biovizbase Configurations and Data

To remove r-bioc-biovizbase configuration and data from Ubuntu we can use the following command:

sudo apt-get -y purge r-bioc-biovizbase

Remove r-bioc-biovizbase configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-biovizbase configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-biovizbase

Dependencies

r-bioc-biovizbase have the following dependencies:

References

r-bioc-biovizbase website

Summary

In this tutorial we learn how to install r-bioc-biovizbase package on Ubuntu using different package management tools: apt, apt-get and aptitude.