How To Install r-bioc-ballgown on Ubuntu

Posted on April 1, 2023 (Last modified on May 20, 2023 )

2 minutes • 358 words

Introduction

In this tutorial we learn how to install r-bioc-ballgown on Ubuntu.

What is `r-bioc-ballgown`

r-bioc-ballgown is:

Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.

There are three methods to install r-bioc-ballgown on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-ballgown Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-ballgown using apt-get by running the following command:

sudo apt-get -y install r-bioc-ballgown

Install r-bioc-ballgown Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-ballgown using apt by running the following command:

sudo apt -y install r-bioc-ballgown

Install r-bioc-ballgown Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-ballgown using aptitude by running the following command:

sudo aptitude -y install r-bioc-ballgown

How To Uninstall r-bioc-ballgown on Ubuntu

To uninstall only the r-bioc-ballgown package we can use the following command:

sudo apt-get remove r-bioc-ballgown

Uninstall r-bioc-ballgown And Its Dependencies

To uninstall r-bioc-ballgown and its dependencies that are no longer needed by Ubuntu, we can use the command below:

sudo apt-get -y autoremove r-bioc-ballgown

Remove r-bioc-ballgown Configurations and Data

To remove r-bioc-ballgown configuration and data from Ubuntu we can use the following command:

sudo apt-get -y purge r-bioc-ballgown

Remove r-bioc-ballgown configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-ballgown configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-ballgown

Dependencies

r-bioc-ballgown have the following dependencies:

References

r-bioc-ballgown website

Summary

In this tutorial we learn how to install r-bioc-ballgown package on Ubuntu using different package management tools: apt, apt-get and aptitude.