How To Install python3-pbcore on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 382 words
Introduction
In this tutorial we learn how to install python3-pbcore on Ubuntu.
What is python3-pbcore
python3-pbcore is:
The pbcore package provides Python modules for processing Pacific Biosciences data files and building PacBio bioinformatics applications. These modules include tools to read/write PacBio data formats, sample data files for testing and debugging, base classes, and utilities for building bioinformatics applications.
This package is part of the SMRTAnalysis suite.
This is the Python 3 module.
There are three methods to install python3-pbcore on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-pbcore Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-pbcore using apt-get by running the following command:
sudo apt-get -y install python3-pbcore
Install python3-pbcore Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-pbcore using apt by running the following command:
sudo apt -y install python3-pbcore
Install python3-pbcore Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-pbcore using aptitude by running the following command:
sudo aptitude -y install python3-pbcore
How To Uninstall python3-pbcore on Ubuntu
To uninstall only the python3-pbcore package we can use the following command:
sudo apt-get remove python3-pbcore
Uninstall python3-pbcore And Its Dependencies
To uninstall python3-pbcore and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove python3-pbcore
Remove python3-pbcore Configurations and Data
To remove python3-pbcore configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge python3-pbcore
Remove python3-pbcore configuration, data, and all of its dependencies
We can use the following command to remove python3-pbcore configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-pbcore
Dependencies
python3-pbcore have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-pbcore package on Ubuntu using different package management tools: apt, apt-get and aptitude.