How To Install python3-nanomath on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 392 words
Introduction
In this tutorial we learn how to install python3-nanomath on Ubuntu.
What is python3-nanomath
python3-nanomath is:
This Python3 module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data.
- Calculate read N50 from a set of lengths get_N50(readlenghts)
- Remove extreme length outliers from a dataset remove_length_outliers(dataframe, columname)
- Calculate the average Phred quality of a read ave_qual(qualscores)
- Write out the statistics report after calling readstats function write_stats(dataframe, outputname)
- Compute a number of statistics, return a dictionary calc_read_stats(dataframe)
There are three methods to install python3-nanomath on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-nanomath Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-nanomath using apt-get by running the following command:
sudo apt-get -y install python3-nanomath
Install python3-nanomath Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-nanomath using apt by running the following command:
sudo apt -y install python3-nanomath
Install python3-nanomath Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-nanomath using aptitude by running the following command:
sudo aptitude -y install python3-nanomath
How To Uninstall python3-nanomath on Ubuntu
To uninstall only the python3-nanomath package we can use the following command:
sudo apt-get remove python3-nanomath
Uninstall python3-nanomath And Its Dependencies
To uninstall python3-nanomath and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove python3-nanomath
Remove python3-nanomath Configurations and Data
To remove python3-nanomath configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge python3-nanomath
Remove python3-nanomath configuration, data, and all of its dependencies
We can use the following command to remove python3-nanomath configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-nanomath
Dependencies
python3-nanomath have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-nanomath package on Ubuntu using different package management tools: apt, apt-get and aptitude.