How To Install python3-gtfparse on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 400 words
Introduction
In this tutorial we learn how to install python3-gtfparse on Ubuntu.
What is python3-gtfparse
python3-gtfparse is:
You find a gene in the genome? Or a feature about it? The gene transfer format (GTF, identical to GFF2) allows your program or your database to exchange this information so it can be presented with genome browsers or used e.g. as a selection for other features like nucleotide variants.
This package provides a parser for GTF/GFF2 files, i.e. sets of routines that read that file and support the computational interpretation of these data.
There are three methods to install python3-gtfparse on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-gtfparse Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-gtfparse using apt-get by running the following command:
sudo apt-get -y install python3-gtfparse
Install python3-gtfparse Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-gtfparse using apt by running the following command:
sudo apt -y install python3-gtfparse
Install python3-gtfparse Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-gtfparse using aptitude by running the following command:
sudo aptitude -y install python3-gtfparse
How To Uninstall python3-gtfparse on Ubuntu
To uninstall only the python3-gtfparse package we can use the following command:
sudo apt-get remove python3-gtfparse
Uninstall python3-gtfparse And Its Dependencies
To uninstall python3-gtfparse and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove python3-gtfparse
Remove python3-gtfparse Configurations and Data
To remove python3-gtfparse configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge python3-gtfparse
Remove python3-gtfparse configuration, data, and all of its dependencies
We can use the following command to remove python3-gtfparse configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-gtfparse
Dependencies
python3-gtfparse have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-gtfparse package on Ubuntu using different package management tools: apt, apt-get and aptitude.