How To Install phylonium on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 361 words
Introduction
In this tutorial we learn how to install phylonium on Ubuntu.
What is phylonium
phylonium is:
This is the phylonium program for estimating the evolutionary distances between closely related genomes. It is much faster than alignment based approaches for phylogeny reconstruction and usually more accurate than competing alignment-free methods.
There are three methods to install phylonium on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install phylonium Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install phylonium using apt-get by running the following command:
sudo apt-get -y install phylonium
Install phylonium Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install phylonium using apt by running the following command:
sudo apt -y install phylonium
Install phylonium Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install phylonium using aptitude by running the following command:
sudo aptitude -y install phylonium
How To Uninstall phylonium on Ubuntu
To uninstall only the phylonium package we can use the following command:
sudo apt-get remove phylonium
Uninstall phylonium And Its Dependencies
To uninstall phylonium and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove phylonium
Remove phylonium Configurations and Data
To remove phylonium configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge phylonium
Remove phylonium configuration, data, and all of its dependencies
We can use the following command to remove phylonium configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge phylonium
Dependencies
phylonium have the following dependencies:
References
Summary
In this tutorial we learn how to install phylonium package on Ubuntu using different package management tools: apt, apt-get and aptitude.