How To Install kleborate on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 390 words
Introduction
In this tutorial we learn how to install kleborate on Ubuntu.
What is kleborate
kleborate is:
Kleborate is a tool to screen Klebsiella genome assemblies for:
- MLST sequence type
- species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
- ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb)
- virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2)
- antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations
- K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
There are three methods to install kleborate on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install kleborate Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install kleborate using apt-get by running the following command:
sudo apt-get -y install kleborate
Install kleborate Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install kleborate using apt by running the following command:
sudo apt -y install kleborate
Install kleborate Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install kleborate using aptitude by running the following command:
sudo aptitude -y install kleborate
How To Uninstall kleborate on Ubuntu
To uninstall only the kleborate package we can use the following command:
sudo apt-get remove kleborate
Uninstall kleborate And Its Dependencies
To uninstall kleborate and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove kleborate
Remove kleborate Configurations and Data
To remove kleborate configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge kleborate
Remove kleborate configuration, data, and all of its dependencies
We can use the following command to remove kleborate configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge kleborate
Dependencies
kleborate have the following dependencies:
References
Summary
In this tutorial we learn how to install kleborate package on Ubuntu using different package management tools: apt, apt-get and aptitude.