How To Install igdiscover on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 353 words
Introduction
In this tutorial we learn how to install igdiscover on Ubuntu.
What is igdiscover
igdiscover is:
IgDiscover analyzes antibody repertoires and discovers new V genes from high-throughput sequencing reads. Heavy chains, kappa and lambda light chains are supported (to discover VH, VK and VL genes).
There are three methods to install igdiscover on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install igdiscover Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install igdiscover using apt-get by running the following command:
sudo apt-get -y install igdiscover
Install igdiscover Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install igdiscover using apt by running the following command:
sudo apt -y install igdiscover
Install igdiscover Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install igdiscover using aptitude by running the following command:
sudo aptitude -y install igdiscover
How To Uninstall igdiscover on Ubuntu
To uninstall only the igdiscover package we can use the following command:
sudo apt-get remove igdiscover
Uninstall igdiscover And Its Dependencies
To uninstall igdiscover and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove igdiscover
Remove igdiscover Configurations and Data
To remove igdiscover configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge igdiscover
Remove igdiscover configuration, data, and all of its dependencies
We can use the following command to remove igdiscover configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge igdiscover
Dependencies
igdiscover have the following dependencies:
References
Summary
In this tutorial we learn how to install igdiscover package on Ubuntu using different package management tools: apt, apt-get and aptitude.