How To Install fastahack on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
3 minutes • 432 words
Introduction
In this tutorial we learn how to install fastahack on Ubuntu.
What is fastahack
fastahack is:
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
- FASTA index (.fai) generation for FASTA files
- Sequence extraction
- Subsequence extraction
- Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
There are three methods to install fastahack on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install fastahack Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install fastahack using apt-get by running the following command:
sudo apt-get -y install fastahack
Install fastahack Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install fastahack using apt by running the following command:
sudo apt -y install fastahack
Install fastahack Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install fastahack using aptitude by running the following command:
sudo aptitude -y install fastahack
How To Uninstall fastahack on Ubuntu
To uninstall only the fastahack package we can use the following command:
sudo apt-get remove fastahack
Uninstall fastahack And Its Dependencies
To uninstall fastahack and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove fastahack
Remove fastahack Configurations and Data
To remove fastahack configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge fastahack
Remove fastahack configuration, data, and all of its dependencies
We can use the following command to remove fastahack configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge fastahack
Dependencies
fastahack have the following dependencies:
References
Summary
In this tutorial we learn how to install fastahack package on Ubuntu using different package management tools: apt, apt-get and aptitude.