How To Install covtobed on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 371 words
Introduction
In this tutorial we learn how to install covtobed on Ubuntu.
What is covtobed
covtobed is:
Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.
There are three methods to install covtobed on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install covtobed Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install covtobed using apt-get by running the following command:
sudo apt-get -y install covtobed
Install covtobed Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install covtobed using apt by running the following command:
sudo apt -y install covtobed
Install covtobed Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install covtobed using aptitude by running the following command:
sudo aptitude -y install covtobed
How To Uninstall covtobed on Ubuntu
To uninstall only the covtobed package we can use the following command:
sudo apt-get remove covtobed
Uninstall covtobed And Its Dependencies
To uninstall covtobed and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove covtobed
Remove covtobed Configurations and Data
To remove covtobed configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge covtobed
Remove covtobed configuration, data, and all of its dependencies
We can use the following command to remove covtobed configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge covtobed
Dependencies
covtobed have the following dependencies:
References
Summary
In this tutorial we learn how to install covtobed package on Ubuntu using different package management tools: apt, apt-get and aptitude.