How To Install assembly-stats on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 376 words
Introduction
In this tutorial we learn how to install assembly-stats on Ubuntu.
What is assembly-stats
assembly-stats is:
Get statistics from a list of files.
Detection of FASTA or FASTQ format of each file is automatic from the file contents, so file names and extensions are irrelevant.
The default output format is human readable. You can change the output format and ignore sequences shorter than a given length.
There are three methods to install assembly-stats on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install assembly-stats Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install assembly-stats using apt-get by running the following command:
sudo apt-get -y install assembly-stats
Install assembly-stats Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install assembly-stats using apt by running the following command:
sudo apt -y install assembly-stats
Install assembly-stats Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install assembly-stats using aptitude by running the following command:
sudo aptitude -y install assembly-stats
How To Uninstall assembly-stats on Ubuntu
To uninstall only the assembly-stats package we can use the following command:
sudo apt-get remove assembly-stats
Uninstall assembly-stats And Its Dependencies
To uninstall assembly-stats and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove assembly-stats
Remove assembly-stats Configurations and Data
To remove assembly-stats configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge assembly-stats
Remove assembly-stats configuration, data, and all of its dependencies
We can use the following command to remove assembly-stats configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge assembly-stats
Dependencies
assembly-stats have the following dependencies:
References
Summary
In this tutorial we learn how to install assembly-stats package on Ubuntu using different package management tools: apt, apt-get and aptitude.