How To Install artfastqgenerator-doc on Ubuntu
Posted on April 1, 2023 (Last modified on May 20, 2023 )
2 minutes • 420 words
Introduction
In this tutorial we learn how to install artfastqgenerator-doc on Ubuntu.
What is artfastqgenerator-doc
artfastqgenerator-doc is:
ArtificialFastqGenerator takes the reference genome (in FASTA format) as input and outputs artificial FASTQ files in the Sanger format. It can accept Phred base quality scores from existing FASTQ files, and use them to simulate sequencing errors. Since the artificial FASTQs are derived from the reference genome, the reference genome provides a gold-standard for calling variants (Single Nucleotide Polymorphisms (SNPs) and insertions and deletions (indels)). This enables evaluation of a Next Generation Sequencing (NGS) analysis pipeline which aligns reads to the reference genome and then calls the variants.
This package contains the Java API documentation for artfastqgenerator.
There are three methods to install artfastqgenerator-doc on Ubuntu. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install artfastqgenerator-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install artfastqgenerator-doc using apt-get by running the following command:
sudo apt-get -y install artfastqgenerator-doc
Install artfastqgenerator-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install artfastqgenerator-doc using apt by running the following command:
sudo apt -y install artfastqgenerator-doc
Install artfastqgenerator-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install artfastqgenerator-doc using aptitude by running the following command:
sudo aptitude -y install artfastqgenerator-doc
How To Uninstall artfastqgenerator-doc on Ubuntu
To uninstall only the artfastqgenerator-doc package we can use the following command:
sudo apt-get remove artfastqgenerator-doc
Uninstall artfastqgenerator-doc And Its Dependencies
To uninstall artfastqgenerator-doc and its dependencies that are no longer needed by Ubuntu, we can use the command below:
sudo apt-get -y autoremove artfastqgenerator-doc
Remove artfastqgenerator-doc Configurations and Data
To remove artfastqgenerator-doc configuration and data from Ubuntu we can use the following command:
sudo apt-get -y purge artfastqgenerator-doc
Remove artfastqgenerator-doc configuration, data, and all of its dependencies
We can use the following command to remove artfastqgenerator-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge artfastqgenerator-doc
Dependencies
artfastqgenerator-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install artfastqgenerator-doc package on Ubuntu using different package management tools: apt, apt-get and aptitude.